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Outpatient Drawing Station Hours/Location

 

Main Phone # - 907-1637

 

LABORATORY DIRECTOR

Billie-Jo Sickler, MT (ASCP) Phone: 907-1650

bsickler@covh.org

                                                  EPIC/SQ CROSSWALK

 

OTHER DEPARTMENTAL INFORMATION

SJH COMMUNICATION

 

LAB COMMUNICATION


GENERAL TEST INFORMATION

 

Testing Algorithms

SPECIMEN COLLECTION

CLINIC INFORMATION

PROCESSING INFORMATION

 

ACCREDITATIONS AND CERTIFICATES

 

WEBSITES

Mayo Clinic Laboratories

Test Code IDTRT IDH1, IDH2, and TERT Mutation Analysis, Next-Generation Sequencing, Tumor


Ordering Guidance


Multiple oncology (cancer) gene panels are available. For more information see Hematology, Oncology, and Hereditary Test Selection Guide.



Necessary Information


A pathology report (final or preliminary), at minimum containing the following information, must accompany specimen for testing to be performed:

1. Patient name
2. Block number-must be on all blocks, slides, and paperwork (can be handwritten on the paperwork)
3. Tissue collection date
4. Source of the tissue



Specimen Required


This assay requires at least 20% tumor nuclei.

-Preferred amount of tumor area with sufficient percent tumor nuclei: tissue 216 mm(2)
-Minimum amount of tumor area: tissue 36 mm(2)
-These amounts are cumulative over up to 10 unstained slides and must have adequate percent tumor nuclei.
-Tissue fixation: 10% neutral buffered formalin, not decalcified
-For specimen preparation guidance, see Tissue Requirement for Solid Tumor Next-Generation Sequencing. In this document, the sizes are given as 4 mm x 4 mm x 10 slides as preferred: approximate/equivalent to 144 mm(2) and the minimum as 3 mm x 1 mm x 10 slides: approximate/equivalent to 36 mm(2).

Preferred:
Specimen Type: Tissue block
Collection Instructions: Submit a formalin-fixed, paraffin-embedded tissue block with acceptable amount of tumor tissue.

 

Acceptable:
Specimen Type: Tissue slide
Slides: 1 Stained and 10 unstained
Collection Instructions: Submit 1 slide stained with hematoxylin and eosin and 10 unstained, nonbaked slides with 5-micron thick sections of the tumor tissue.
Note: The total amount of required tumor nuclei can be obtained by scraping up to 10 slides from the same block.
Additional Information: Unused unstained slides will not be returned.

Specimen Type: Cytology slide (direct smears or ThinPrep)
Slides: 1 to 3 Slides
Collection Instructions: Submit 1 to 3 slides stained and coverslipped with a preferred total of 5000 nucleated cells, or a minimum of at least 3000 nucleated cells.
Note: Glass coverslips are preferred; plastic coverslips are acceptable but will result in longer turnaround times.
Additional Information: Cytology slides will not be returned.


Useful For

Identifying specific mutations within the IDH1 and IDH2 genes and the TERT promoter to assist in tumor diagnosis/classification

Method Name

Sequence Capture Next-Generation Sequencing (NGS)

Reporting Name

IDH1/2 and TERT Mutation Analysis

Specimen Type

Varies

Specimen Minimum Volume

See Specimen Required

Specimen Stability Information

Specimen Type Temperature Time
Varies Ambient (preferred)
  Refrigerated 

Reject Due To

Specimens that have been decalcified (all methods)
Specimens that have not been formalin-fixed, paraffin-embedded, except for cytology slides
Extracted nucleic acid (DNA/RNA)		 Reject

Clinical Information

IDH1 and IDH2 (IDH) genes encode enzymes involved in cellular glucose metabolism. Mutations in IDH genes primarily involve codons R132 in IDH1 and R140 and R172 in IDH2, and lead to the neomorphic ability to generate oncometabolite R(-)-2-hydroxyglutarate, which contributes to tumorigenesis.

 

TERT gene encodes the catalytic subunit of telomerase, an enzyme complex that regulates telomere length. Mutations in the TERT promoter primarily involve the mutational hotspot positions c.-124 (also known as C228) and c.-146 (also known as C250) and increase telomerase activity allowing tumor cells to overcome cellular senescence.

 

IDH and TERT promoter mutations are essential diagnostic molecular biomarkers for diffuse gliomas, a group of central nervous system (CNS) tumors. Testing for both biomarkers is often diagnostically necessary. This test simultaneously assesses for somatic mutations involving the IDH and TERT promoter genes. IDH and TERT promoter mutations are also molecular biomarkers for a variety of non-CNS tumors but usually do not co-occur and would be best evaluated by stand-alone IDH and TERT promoter tests.

Reference Values

An interpretive report will be provided.

Day(s) Performed

Monday through Friday

Report Available

12 to 20 days

Performing Laboratory

Mayo Clinic Laboratories in Rochester

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.

CPT Code Information

88381-Microdissection, manual

0481U

Forms

If not ordering electronically, complete, print, and send a Oncology Test Request (T729) with the specimen.